Ponisio, L.C. Interaction flexibility and pyrodiversity increase pollinator population resistance (2020) Ecology and Evolution 

Fully reproducible code and explanations available on Github and Zenodo

Ponisio, L.C., de Valpine, P., Michaud, N. Turek, D. One size does not fit all: Customizing MCMC methods for hierarchical models using NIMBLE (2020) Ecology and Evolution

 Fully reproducible code available on github and Zenodo. 
Also see the new R package which implements many of the functions for optimizing the efficiency of MCMC for occupancy and N-mixture models:nimbleEcology: Distributions for Ecological Models in 'nimble'. R package version 0.1.0. https://CRAN.R-project.org/package=nimbleEcology

​Ponisio, L.C., ​ de Valpine, P., M'Gonigle, L.K, Kremen, C. Proximity of restored hedgerows interacts with local floral diversity and bee traits to shape pollinator metacommunity dynamics (2019). Ecology Letters. 

Fully reproducible code and explanations available on Github and Zenodo

Opportunistic attachment assembles plant-pollinator networks 
Ponisio, L.C., Gaiarsa, M.P., and Kremen, C. (2017). Ecology Letters.

 Fully reproducible code and explanations available on Github and Zenodo

Coevolution leaves a weak signal on ecological networks 
​Ponisio, L.C. and M'Gonigle, L.K. (2017) Ecosphere

Code for building ecological networks based on different coevolutionary scenarios available on Github

Diversification practices reduce organic to conventional yield gap
Ponisio, L.C. et al. (2014) Proc. R. Soc. B

We have write up giving the background to our analysis and a walk though of our modeling decisions and accompanying code/data on Github.